Sequence data processing and analysis

• Our services cover state-of-the-art development of pipelines and analysis of data from a wide range of omics experiments from microarrays and NGS sequencing, and include genome assembly, metagenomics (WMGS and targeted – 16SrRNA, ITS, …), phylogenetics, genome analysis (targeted panels of mutations, WGS, WES, SNP calling), transcriptome analysis (RNAseq, miRNAseq, expression microarrays), epigenomics (epigenetic chips).
• All the data are subjected to strict quality control and to multiple profiling computational pipelines to obtain complementary features sets for secondary, statistical, and machine learning analysis. The methods combine out in-development approaches and the state-of-the-art tools for quality control, genome assembly, taxonomic profiling, functional profiling and profiling of metabolic potential, estimation of microbiome responsible for changes metabolic profiles, estimation of crosslink between xenobiotics, host metabolism and gut microbiome (internal tool in development); variant calling, genotype calling, differential gene expression analysis, …etc.
• Additionally, we provide training and support for researchers who are new to bioinformatics or who need help with specific tools or analyses.

Whether you are just thinking about a new experiment or already have the resulting data, you may contact us with your questions and we will assess the feasibility of the various analyses required. Ideally, you would contact us at the experimental design stage, so we can ensure that all the relevant information will be available to answer your questions.

We also provide consultations on data analysis and methods.